Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLSIYQASIPTFLRTLGNLSAILKKAAAHAEAKNIDPRIFIDARLAPDMFPLARQVQIASDAAKGAGARLAGLEVPSYA--DTETTFDELQARIARTVEFLEGIREEQLDGAEERNVTLKVRGQEISFNGRDFLFGFALPNFFFHVTTAYAILRHNGVELGKMDFLGGA
2OQM Chain:A ((17-184))
FQGMLYDLTVVQFSKMLKNLNAIFDKAEAFAELKKVDMDVLLNSRLAADQFNLIRQVQIACDTAKVGVARLTGQLETAPKHDDSETTLAELRQRIASVLTYLEGFSEADFANAATIQISQPRW-QGKYLTGYEFAIEHAIPNLYFHITTAYGILRHNGVEVGKKDYLGAM
General information:
TITO was launched using:
RESULT:
Template:
2OQM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83833 for 1256 contacts (-66.7/contact) +
2D Compatibility (PS) -17952 + (NN) -7321 + (LL) -172
1D Compatibility (HY) -12400 + (ID) 3600
Total energy: -125278.0 ( -99.74 by residue)
QMean score : 0.481
(partial model without unconserved sides chains):
PDB file :
Tito_2OQM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OQM-query.scw
PDB file :
Tito_Scwrl_2OQM.pdb
: