Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGSTTSSQKFIARNRAPRVQIEYDVELYGAEKKVQLPFVMGVMADLAGKPAEPQAAVADRKFLEIDVDNFDARLKAMKPRVAFNVPNVL-TGEGNLSLDITFE------SMDDFSPAAVARKVDSL-NKLLEARTQLANLLTYMDGKTGAEEMIMK-AIKDPALLQALASAPKPKDDEPQA
2WQ4 Chain:A ((2-135))
---PLLSASIV---SAPVVTSETYVDIPG---------------------------------LYLDVAKAGIR--DGKLQVILNVPTPYATGNNFPGIYFAIATNQGVVADGCFTYSSKVPESTGRMPFTLVATIDVGSGVTFVKGQWKSV-RGSAMHIDSYASLSAIWGTAAPSS-----
General information:
TITO was launched using:
RESULT:
Template:
2WQ4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21463 for 873 contacts (-24.6/contact) +
2D Compatibility (PS) -12184 + (NN) 9315 + (LL) 3364
1D Compatibility (HY) -2800 + (ID) 1400
Total energy: -25168.0 ( -28.83 by residue)
QMean score : 0.179
(partial model without unconserved sides chains):
PDB file :
Tito_2WQ4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WQ4-query.scw
PDB file :
Tito_Scwrl_2WQ4.pdb
: