Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------------MATVIDRHSQPTWRDFLELTKP-----KVVVLMLITSLIGMLLATKAPLDGFVPWQVLIFGNLGIGLCAGAAAAVNHVVDRRIDSIMARTHKRPLAEGRVSPSMALGFALLLALAGMAVLLAFTNPLTAWLTLASLLGYAALYTGFLKRATPQNIVIGGLAGAAPPLLGWVAITGHLSAEPLLLVLIIFAWTP------------------------PHFWALCIHRKDEYAKADIPMLPVTHGERYTKLHILLYT----LVLFAVSLMPFVIHMSGLVYLLCALALGARFLDWAWALYCDSRPHAAIKTFKYSIVYLFLLFMALLVDHYLPLKLLL |
| 4Q05 Chain:A ((34-360)) | ENSWQIGPRTLPAPSGASDVLYNIISKTPTPVPTINLNLVPRTESEWRAAITQLDEGKVDMAREISKQLSVSVEHGVIE----GVSVYYVTPVEVAPDLE---DKLFVHTHGGAFVLNG-GEAGTIEAIVIATLAKVRVLSIDYRMPPSHPAPAARDDVFTVYQHLLKQGSAQKIALGGSSGGANLTMGLVQ---HLIEQEVDLPGALFLGTPGADMSKTGDSYYINDGIDRNLVTYDGFLEAAVRLYANGRDLKDPLVSPLYGDLHGFPPTFLITGTRDLLLSATVRTHIKLRQSGVVADLFVYE-GIAHGDYAVDLTA------------PETQHAFAELNAFLLQHLR------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4Q05.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -356391 for 2349 contacts (-151.7/contact) +
2D Compatibility (PS) -28971 + (NN) -12373 + (LL) 2244
1D Compatibility (HY) -3200 + (ID) 2800
Total energy: -401491.0 ( -170.92 by residue)
QMean score : 0.211
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