Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQQHDTHSKAIGYLLWIFGFTGSHRFYYGKPITGTIWFFTFGLFFIGWIIDLFLIPSMDREADRRFQGGNLDYNVAWILLTFLGVLGVHRMYMGKWITGIIYLFTGGLFFLGVLYDFWTLNGQVSERNGPQRI
1VF5 Chain:F ((1-33))
-----------------------------MTEEMLYAALLSFGLIFVGWGLGVLLLKIQGAE------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1VF5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8714 for 131 contacts (-66.5/contact) +
2D Compatibility (PS) -3110 + (NN) 2522 + (LL) 6728
1D Compatibility (HY) -3200 + (ID) 400
Total energy: -6174.0 ( -47.13 by residue)
QMean score : -0.077
(partial model without unconserved sides chains):
PDB file :
Tito_1VF5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VF5-query.scw
PDB file :
Tito_Scwrl_1VF5.pdb
: