Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLPAMRTGLLCALLGVTAPAWAEYVTVISFGGANKEAQETAFYKPFKSATGNRVVHGSYNGDLAKLKRMVEISHVSWDVVEVEAPELARGCEEGLFEKLDMAKVGDPADFVPG--------A-VQPCGVGIFVWTTLLAYNPGKVAG-----SPQGWADFWD--VK-KFPGK-RGLRWGAKYSLEFALMADGVAPKDVYQTLATPAGVERAFRKLDELKPYI-HWWKSGQDPVRDLADGTVVMSSAYNGRIAAAQA------EKQRLAMVWS--GGVYDFDFWALPVGVWKKQLAEEFIRFASQPEQQKAFAENIAYGPANRKAVGLLDPQVAANLPTAPQNMQNAVGMNVAFWAEHGEALEQRFQNWAKR |
| 3TTN Chain:A ((6-301)) | -----------------------SLHIYNWTDY----IAPTTLKDFTKESGIDVSYDVF-DSNETLEGKLVSGHSGYDIVVPSNNFLGKQIQAGAFQKLDKSKLPNWKNLDPALLKQLEVSDPGNQYAVPYLWGTNGIGYNVAKVKEVLGDQPIDSWAILFEPENMKKLAKCGVAFMDSGDEMLPAALNYLGLDPN----TH-DPKDYKKAEEVLTKVRPYVSYF--HSSKYISDLANGNICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEGANLWFDLMAIPADAKAADNAYAFIDYLLRPEVIAKVSDYVGYANAIPGARPLMDKSVSDSEEVYPPQAVLDKLYVSAVLPAKVLRLQTRTWTRIK- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TTN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -100228 for 2221 contacts (-45.1/contact) +
2D Compatibility (PS) -29347 + (NN) -10923 + (LL) 3140
1D Compatibility (HY) -15200 + (ID) 3000
Total energy: -155558.0 ( -70.04 by residue)
QMean score : 0.330
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