Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHALIVVAHHHPRSLTHALAARIAEGVVRAGHSAETADLAAEGFEPR-----------------FGLADHAVHRGQASPPADVLAEQARIDRADTLVLVYPIYWWSMPALLKGWIDRVFSNGWAFD---YSIGGDLRKKLQRLRVVLVGVGGADAGTFERHGYAGAMRT---QIDHGIFDYCGARVVRSELLLESESADPIRHLDQALHIGSQLFAARGAQGAAQAQPLEA
4QOF Chain:B ((7-196))
---LIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYK-QRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTT----GGTAEMYTKTGVNGDSRYFLWPLQHGTLHFCGFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHF
General information:
TITO was launched using:
RESULT:
Template:
4QOF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106670 for 1233 contacts (-86.5/contact) +
2D Compatibility (PS) -17598 + (NN) -3896 + (LL) 264
1D Compatibility (HY) -13600 + (ID) 3050
Total energy: -144550.0 ( -117.23 by residue)
QMean score : 0.403
(partial model without unconserved sides chains):
PDB file :
Tito_4QOF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QOF-query.scw
PDB file :
Tito_Scwrl_4QOF.pdb
: