Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHYVTPDLCDAYPELVQVVEPMFSNFGG----RDSFGGEIVTIKCFEDNSLVKEQVDKDGKGKVLVVDGGGSLRRALLGDMLAEKAAKNGWEGIVVYGCIRDVDVIAQTDLGVQALASHPLKTDKRGIGDLNVAVTFGGVTFRPGEFVYADNNGIIVSPQALKMPE
1Q5X Chain:A ((2-160))
-KYDTSELCDIYQED----VNVVEPLFSNFGGRASFGGQIITVKCFEDNGLLYDLLEQNGRGRVLVVDGGGSVRRALVDAELARLAVQNEWEGLVIYGAVRQVDDLEELDIGIQAMAAIPVGAAGEGIGESDVRVNFGGVTFFSGDHLYADNTGIILSEDPLDIE-
General information:
TITO was launched using:
RESULT:
Template:
1Q5X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93216 for 1309 contacts (-71.2/contact) +
2D Compatibility (PS) -17842 + (NN) -13371 + (LL) 764
1D Compatibility (HY) -16800 + (ID) 3800
Total energy: -144265.0 ( -110.21 by residue)
QMean score : 0.568
(partial model without unconserved sides chains):
PDB file :
Tito_1Q5X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Q5X-query.scw
PDB file :
Tito_Scwrl_1Q5X.pdb
: