Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHDEREGYLEILSRITTEEEFFSLVLEICGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKSRYISEDYTSIDPIVRHGLLEYTPLIWNGEDFQENRFFWEEALHHGIRHGWSIPVRGKYGLISMLSLVRSSE---SIAATEILEKESFLLWITSMLQATFGDLLAPRIVPESNVRLTARETEMLKWTAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAIGLLN
4Y15 Chain:B ((10-240))
----RRTMLLRFQRMETAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDDLFNEAQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIV--MTPEMN--FSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLIH
General information:
TITO was launched using:
RESULT:
Template:
4Y15.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129335 for 1714 contacts (-75.5/contact) +
2D Compatibility (PS) -24594 + (NN) -12936 + (LL) 532
1D Compatibility (HY) -14000 + (ID) 3850
Total energy: -184183.0 ( -107.46 by residue)
QMean score : 0.385
(partial model without unconserved sides chains):
PDB file :
Tito_4Y15.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Y15-query.scw
PDB file :
Tito_Scwrl_4Y15.pdb
: