Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLDNAIPQGFEDAVELRRKNRETVVKYMNTKGQDRL-RRHELFVEDGCGGLWTTDTGSPIVIRGKDKLAEHAVWSLKCFPDWEWYNIKVFETDDPNHFWVECDGHGKILFPGYPEGY---YENHFLHSFELDDGKIKRNREFMNVFQQLRALSIPVPQIKREGIPT
3FF0 Chain:A ((2-162))
MLDNAIPQGFEDAVELRRKNRETVVKYMNTKG-QDRLRRHELFVEDGCGGLWTTDTGSPIVIRGKDKLAEHAVWSLKCFPDWEWYNIKVFETDDPNHFWVECDGHGKILFPG---YPEGYYENHFLHSFELDDGKIKRNREFMNVFQQLRALSIPVPQIKREGIP-
General information:
TITO was launched using:
RESULT:
Template:
3FF0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26600 for 998 contacts (-26.7/contact) +
2D Compatibility (PS) -17024 + (NN) -8588 + (LL) 228
1D Compatibility (HY) -20800 + (ID) 7600
Total energy: -80384.0 ( -80.55 by residue)
QMean score : 0.602
(partial model without unconserved sides chains):
PDB file :
Tito_3FF0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FF0-query.scw
PDB file :
Tito_Scwrl_3FF0.pdb
: