Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTERKRWLAGCLSALLSLPLAAAVPGPDAPADLARGKAMAQKMCSRCHDDDGNGGPRPNRSYPKLAGLDREYLYKQIYDLKTQR---------RRNPATNGRGEELSAADVVNVSAWFAAQRMSAGEQTLADPRQRERGRQLFENGLAQRGVPPCVTCHGPAAQGLAALKAPRLAGQWAEYLATQLHGFRDGKR---GNSATMRAVAGGLEDSHIQALAGYLGSLGP
1M6Z Chain:C ((13-189))
------------------------------------------VCGACHGVDGNS-PAPN--FPKLAGQGERYLLKQLQDIKAGSTPGAPEGVGRKVLEMTGMLDPLSDQDLEDIAAYFSSQKGSVG---YADPALAKQGEKLFRGGKLDQGMPACTGCHAPNGVGNDLAGFPKLGGQHAAYTAKQLTDFREGNRTNDGDTMIMRGVAAKLSNKDIEALSSYIQGL--
General information:
TITO was launched using:
RESULT:
Template:
1M6Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24548 for 1249 contacts (-19.7/contact) +
2D Compatibility (PS) -18221 + (NN) -15681 + (LL) 2840
1D Compatibility (HY) -9200 + (ID) 3400
Total energy: -68210.0 ( -54.61 by residue)
QMean score : 0.424
(partial model without unconserved sides chains):
PDB file :
Tito_1M6Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M6Z-query.scw
PDB file :
Tito_Scwrl_1M6Z.pdb
: