Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAYRPQDIFFRSSAPVTIDEDRCIADKGC--TVCVEVCPMDLLAIDPTTRKAYMAYDE-CWYCMPCEKDCPTGAVKVEIPYLLR
3GYX Chain:D ((1-61))
--------------PTYVDPSKCDGCKGGEKTACMYICPNDLMILDPEEMKAFNQEPEACWECYSCIKICPQGAI---------
General information:
TITO was launched using:
RESULT:
Template:
3GYX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45846 for 375 contacts (-122.3/contact) +
2D Compatibility (PS) -5833 + (NN) -3346 + (LL) 2072
1D Compatibility (HY) -3600 + (ID) 1250
Total energy: -57803.0 ( -154.14 by residue)
QMean score : 0.462
(partial model without unconserved sides chains):
PDB file :
Tito_3GYX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GYX-query.scw
PDB file :
Tito_Scwrl_3GYX.pdb
: