Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPDTSPDLPAMSPLAVYRQAVEQRGFAPDEAQRRAAEALERCFQALHEAHRHGAIQGVYLWGPVGRGKTWLMDHFYQCLRVPARRQHFHHFMQWVHQRQFELTGTADPLRALARELARDVRVLCFDELFVSDIGDAILLGSLLRIMFEEGVVLVATSNQPPEQLY---ADGFNRERFLPAIEAIQRHMAVVAVDGGQDHRLHPGRAE-QRYWVVEAGQASGFAELFARLSAGEAASTQPIELG-HRPLAVHRHSESVLWCSYA------QLCEAPLSALDFIGLCDRYRA-ILMDDLPCLSASQREGRIARGTEDGAQLVEAGDRELPQLSVHDDGVRRFIALVDECYDRKVPLYLEARVPLEALYTEGYLAFAFRRTLSRLREMQLARFGSDSAG |
4I9F Chain:A ((10-352)) | ----KSIAQEHDCLLIDLDGTVFCG---RQPTGGAVQSLSQV-----------RSRKLFVTNNASRSADEVAAHLCE-LGFTATGED-------------VVTSAQSAAHLLAGQLAPGARVLIVGT------------EALANEVAAVGLRPVRRFEDRPDAVVQGLSMTTGWSDLAEAALAIRAGALWVAANVDPTLPTERGLLPGNGSMVAALRTATGMDPRVAGKPAPALMTEAVARGDFRAALVVGDRLDTDIEGANAAGLPSLMVLTGVNSAWDAVYAEPVRRPTYIGHDLRSLHQDSKLLAV--APQPGWQIDVGGGAVTVCANGIDDGLSIVRAVASAVWEARAADLHQRPLRIEAG--------------DERARAALQRWSLMRSD |
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General information:
TITO was launched using:
| RESULT:
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Template: 4I9F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -119605 for 2752 contacts (-43.5/contact) +
2D Compatibility (PS) -35337 + (NN) -15703 + (LL) 5280
1D Compatibility (HY) -2000 + (ID) 2600
Total energy: -169965.0 ( -61.76 by residue)
QMean score : 0.301
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