Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLKPQTLMVAIQCV---------------AARTRELDAQLQNDD--PQNAAELE---QLLV--GYDLAADDLKNAYEQALGQ--YSGLPPYDRLIEEPAS-
1V5O Chain:A ((1-102))
GSSGSSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDNVGLRTPGRTPSGPSSG
General information:
TITO was launched using:
RESULT:
Template:
1V5O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5199 for 381 contacts (-13.6/contact) +
2D Compatibility (PS) -8158 + (NN) -1537 + (LL) 0
1D Compatibility (HY) -3200 + (ID) 850
Total energy: -18944.0 ( -49.72 by residue)
QMean score : 0.289
(partial model without unconserved sides chains):
PDB file :
Tito_1V5O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V5O-query.scw
PDB file :
Tito_Scwrl_1V5O.pdb
: