Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTAQEFRAGQVANINGAPWVIQKAEFNKSGRN-AAVVKMKLKNLLTGAGTETVFKADDKLEPIILDRKEVTYSYFADPLYVFMDS-EFNQYEIEKDDLEGVLTFIEDGMTDICEAVFYNDKVISVELPTTIVRQIAYTEPAVRGDTSGKVMKTARLNNGAELQVSAFCEIGDSIEIDTRTGEYKSRVKA
2EIF Chain:A ((9-129))
QVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEVPIIDRRKGQVLAIMGDMVQIMDLQTYETLELPIPE---GIEGLEPGG--EVEYIEAVGQYKIT----------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2EIF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56260 for 801 contacts (-70.2/contact) +
2D Compatibility (PS) -12631 + (NN) 1785 + (LL) 4380
1D Compatibility (HY) -3600 + (ID) 1100
Total energy: -67426.0 ( -84.18 by residue)
QMean score : 0.497
(partial model without unconserved sides chains):
PDB file :
Tito_2EIF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2EIF-query.scw
PDB file :
Tito_Scwrl_2EIF.pdb
: