Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEPFRNIGIIGRLGSTQVLDTIRRLKKFLIDRHLHVILEDTIAEVLPGHGLQTCSRKIMGEICDLVVVVGGDGSMLGAARALARHKVPVLGINRGSLGFLTDIRPDELEAKVGEVLDGQYIVESRFLLDAQVRRGIDSMGQGDALNDVVLHPGKSTRMIEFELYIDGQFVCSQKADGLIVATPTGSTAYALSAGGPIMHPKLDAIVIVPMYPHMLSSRPIVVDGNSELKIVVSPNMQIYPQVSCDGQNHFTCAPGDTVTISKKPQKLRLIHPIDHNYYEICRTKLGWGSRLGGGD
1YT5 Chain:B ((42-256))
--------------------------------------------------------------ADLIVVVGGDGTVLKAAKKAA-DGTPMVGFKAGRLGFLTSYTLDEIDRFLEDLRNWNFREETRWFIQIE-----SELGNHLALNDVTLERDLSGKMVEIEVEVEHHSSMWFFADGVVISTPTGSTAYSLSIGGPIIFPECEVLEISPIAPQFFLTRSVVIPSN--FKVVVESQRDI--NMLVDG---VLTGKTKRIEVKKSRRYVRILRPPEYDYVTVIRDKLGYGRR-----
General information:
TITO was launched using:
RESULT:
Template:
1YT5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137893 for 1726 contacts (-79.9/contact) +
2D Compatibility (PS) -24226 + (NN) -15348 + (LL) 5032
1D Compatibility (HY) -20000 + (ID) 3800
Total energy: -196235.0 ( -113.69 by residue)
QMean score : 0.431
(partial model without unconserved sides chains):
PDB file :
Tito_1YT5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YT5-query.scw
PDB file :
Tito_Scwrl_1YT5.pdb
: