Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVILLGAPGAGKGTQARFITEKFGIPQISTGDMLRAAVKAGSPLGQQVKGVMDSGGLVSDDIIIALIKERITEADCAKGFLFDGFPRTIPQAEALKDAGVTIDHVVEIAVDDEEIVSRIAGRRVHPASGRVYHTEHNPPKVAGKDDVTGEELIQREDDKEETVRHRLSVYHSQTKPLVDFYQKLSAAEGTPKYHSIAGVGSVEQITAKVLSALS
1AKE Chain:B ((1-213))
MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSK-EAEAGNTKYAKVDGTKPVAEVRADLEKIL-
General information:
TITO was launched using:
RESULT:
Template:
1AKE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81625 for 1690 contacts (-48.3/contact) +
2D Compatibility (PS) -23423 + (NN) -14348 + (LL) 148
1D Compatibility (HY) -21600 + (ID) 6750
Total energy: -147598.0 ( -87.34 by residue)
QMean score : 0.574
(partial model without unconserved sides chains):
PDB file :
Tito_1AKE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AKE-query.scw
PDB file :
Tito_Scwrl_1AKE.pdb
: