Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDRLQIEDLLLGDGKEVVKGALITTQYKGTLEDGTLFDSSYERGRPFQCVIGTGRVIKGWDQGLMGMKVGGKRRLFVPSHLAYGERQVGAHIKPHSNLLFEIELLEVLTRDD
4GIV Chain:B ((106-209))
----LKYEDLTEGS--EARAGQTVSVHYTGWLTDGQKFGSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV-----
General information:
TITO was launched using:
RESULT:
Template:
4GIV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57609 for 757 contacts (-76.1/contact) +
2D Compatibility (PS) -10092 + (NN) 6034 + (LL) 220
1D Compatibility (HY) -7600 + (ID) 2600
Total energy: -71647.0 ( -94.65 by residue)
QMean score : 0.564
(partial model without unconserved sides chains):
PDB file :
Tito_4GIV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GIV-query.scw
PDB file :
Tito_Scwrl_4GIV.pdb
: