Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGKPCHFAQFDLQPAFLVDLDELGQRYRELVRSVHPDRFADAPEREQRLALERAAQLNEAYQTLKSAPRRALYLLTLSGHELPLEATVQDPEFLLQQMQLREELEELQDSADLAGVATFKRRLKAAQAELEREFAACWDDAQRREEAERLVRRMQFLDKLAQEVRQLEERLDD
1HDJ Chain:A ((1-65))
--GKDYYQTLGLARG--ASDEEIKRAYRRQALRYHPDKNKEP------GAEEKFKEIAEAYDVLSDPRKREIFDR--------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1HDJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21194 for 412 contacts (-51.4/contact) +
2D Compatibility (PS) -7186 + (NN) -6327 + (LL) 10268
1D Compatibility (HY) -400 + (ID) 700
Total energy: -25539.0 ( -61.99 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_1HDJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HDJ-query.scw
PDB file :
Tito_Scwrl_1HDJ.pdb
: