Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNGVSRLLSLALLGAALHWAPAQAEEQPRLFELLGQPGYKATWHAMFKGESDVPKWVSDASGPSSPSTSLSLEGQPYVLANSCKPHDCGNNRLLVAFRGDKSAAYGLQVSLPDEPAEVMQTPSKYATYRWYGEPSRQVRELLMKQLESDPNWK
2JKG Chain:A ((91-133))
------------------------------------------------------------------PDGVWLGGTKYQFINIERDLEFEGYNFDVATCAKLK--GGLHLVK------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2JKG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9375 for 222 contacts (-42.2/contact) +
2D Compatibility (PS) -4494 + (NN) -1963 + (LL) 6484
1D Compatibility (HY) -1200 + (ID) 400
Total energy: -10948.0 ( -49.32 by residue)
QMean score : 0.392
(partial model without unconserved sides chains):
PDB file :
Tito_2JKG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JKG-query.scw
PDB file :
Tito_Scwrl_2JKG.pdb
: