Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNAADRVMQSYGRCCA-STGFFDDFYRHFLASSPQIRAKFAT-T------------DMTAQKHLLRAGIMNLVMYARGMS--DSKLRALGASHSRAALDIRPELYDLWLDALLMAVAEHDRDCDAETRDAWRDVMGRGIAVIKSYY
3PT8 Chain:B ((7-148))
-PQKAALKSSWSRFMNNAVTNGTNFYMDLFKAYPDTLTPFKSLFQNVSFNQMTNHPTMKAQSLVFCNGMSSFVDNLDDHEVLVVLLQKMAKLHFN--RGIRIKELRDGYGTLLRYLEDHCH-VEGSTKNAWEDFIAYICRVQGDFM
General information:
TITO was launched using:
RESULT:
Template:
3PT8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78216 for 865 contacts (-90.4/contact) +
2D Compatibility (PS) -13528 + (NN) -8451 + (LL) 420
1D Compatibility (HY) -6800 + (ID) 1150
Total energy: -107725.0 ( -124.54 by residue)
QMean score : 0.510
(partial model without unconserved sides chains):
PDB file :
Tito_3PT8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PT8-query.scw
PDB file :
Tito_Scwrl_3PT8.pdb
: