Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLLVLFCCLWLLPGVASAAPSVGEIRVVS-ETWTRYTQED----GRGVAWDLLRAVYEPAGVRLRIANEPYTRAVGLVLRGEADAWVGAY--RGEIDE--ALYPRWPYDVDPIAVLSLKDNPPPPLEGLSRFRLSWMRGYAFARYFPT-LTPHSELQRRTSALPMLLNHRVDYFIDSRPELEEMLAGAGALAAEYRI----TDVTRLPLYLGFSDSPRGRELLALFDRRMRQLHASGELERIFARWNWPYAPLKAILPPKE
2YLN Chain:A ((54-281))
--------------------NNKGTVTVGTEGTYAPFTYHDKDGKLTGYDVEVTRAVAEKLGVKVEFKETQWDSMMAGLKAGRFDVVANQVGLTSPERQATFDKSE-PYSWSGAVLVAHNDSNIKSIADIKGVKTAQSLTSNYGEKAKAAGAQLVPVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNP--NAGVKIVWSAPADEKVGSGLIVNKG--NDEAVAKFSTAINELKADGTLKKLGEQFFGKDIS---------
General information:
TITO was launched using:
RESULT:
Template:
2YLN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128580 for 1746 contacts (-73.6/contact) +
2D Compatibility (PS) -23256 + (NN) -12037 + (LL) 3328
1D Compatibility (HY) -5200 + (ID) 1550
Total energy: -167295.0 ( -95.82 by residue)
QMean score : 0.315
(partial model without unconserved sides chains):
PDB file :
Tito_2YLN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YLN-query.scw
PDB file :
Tito_Scwrl_2YLN.pdb
: