Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRLEQILTPGRSLVNVPGGSKKRVLEQIANLVARELPEFDAQTIFENLVAREKLGSTGFGNGIAIPHCRLS-GCQSPISAVLHLDAPVDFDALDGAPVDLLFVLLVPEAATEEHLELLRQIAAMLDRADVRDRLRSAPTAEALYQIVVDVQNGQ
1A6J Chain:A ((9-157))
--QLSSVLNRECTRSRVHCQSKKRALEIISELAAKQL-SLPPQVVFEAILTREKMGSTGIGNGIAIPHGKLEEDTLRAVGVFVQLETPIAFDAIDNQPVDLLFALLVPADQTKTHLHTLSLVAKRLADKTICRRLRAAQSDEELYQIITDTE---
General information:
TITO was launched using:
RESULT:
Template:
1A6J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140474 for 1200 contacts (-117.1/contact) +
2D Compatibility (PS) -16953 + (NN) -14201 + (LL) 140
1D Compatibility (HY) -12400 + (ID) 3200
Total energy: -187088.0 ( -155.91 by residue)
QMean score : 0.669
(partial model without unconserved sides chains):
PDB file :
Tito_1A6J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1A6J-query.scw
PDB file :
Tito_Scwrl_1A6J.pdb
: