Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSELNLTTDEARVSYGIGRQLGDQLRENPVPGMTLDAVLAGLSDAFAGIDSRVSGEALSASFQVIRERMQAEAQAKAEAAAGEGRAYLAENAKREGVTVLPSGLQFEVLSTGEGAKPSREDTVRTHYHGTLIDGTVFDSSYQRGQPAEFPVGG--VIAGWVEALQLMNAGSKWRLHVPSELAYGGQAVGS-IPPHSVLVFDVELLEIL
4GIV Chain:B ((99-209))
------------------------------------------------------------------------------------------------VVTTESGLKYEDLTEGS--EARAGQTVSVHYTGWLTDGQKFGSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV-
General information:
TITO was launched using:
RESULT:
Template:
4GIV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58290 for 792 contacts (-73.6/contact) +
2D Compatibility (PS) -11366 + (NN) -2321 + (LL) 6732
1D Compatibility (HY) -6400 + (ID) 2400
Total energy: -74045.0 ( -93.49 by residue)
QMean score : 0.518
(partial model without unconserved sides chains):
PDB file :
Tito_4GIV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GIV-query.scw
PDB file :
Tito_Scwrl_4GIV.pdb
: