Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIQRVYVALGSNLAEPREQIQAALDAFERLPETRLVAVSPLYISDPLGPADQPRFVNGVAALDTNLAPLDLLDALQAIELEQGRVRDLRWGPRTLDLDILLFGEQLLDLPRLKVPHYHMQARAFVLYPLADLAPDLRLPDGRHLPELLAACPFEGIERLPGA
1CBK Chain:B ((5-147))
-----YIALGSNLNTPVEQLHAALKAISQLSNTHLVTTSSFYKSKPLGPQDQPDYVNAVAKIETELSPLKLLDELQRIENEQGRVRLRRWGERTLDLDILLYGNEIIQNERLTIPHYDMHNREFVIVPLFEIASDLVLPNSQIITELV--------------
General information:
TITO was launched using:
RESULT:
Template:
1CBK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97215 for 1081 contacts (-89.9/contact) +
2D Compatibility (PS) -14949 + (NN) -7021 + (LL) 1508
1D Compatibility (HY) -17200 + (ID) 4000
Total energy: -138877.0 ( -128.47 by residue)
QMean score : 0.581
(partial model without unconserved sides chains):
PDB file :
Tito_1CBK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CBK-query.scw
PDB file :
Tito_Scwrl_1CBK.pdb
: