Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSSQDIHARSATTTPMPSVRNQEEVAKLIDVSKCIGCKACQVACSEWNELRDEVGHNHGTYDNPMDLTADSWTVMRFTEHENEAGNLEWLIRKDGCMHCAEPGCLKACPSPGAIVKYANGIVDFNQDKCIGCGYCITGCPFDIPRISQKDHKAYKCSLCSDRVSVGMEPACVKTCPTGAIVFGSKEDMKE------HAAERIVDLKSRGYENAGLYDPEGVGGTHVMYVLHHADKPSLYAGLADQPSVSPLVSLWKGVTKPLALLAMGATVLAGFFHYVRVGPNRADDEEDHGQAEAPVHQVDPSVHTFDPHERR |
2VPW Chain:F ((5-166)) | -------------------------AMAIDLSLCVGCAACAVACKMENEVPPGV--------------FNLWIRER---EVGEYPNLVVEFRPEQCLHCENPPCVPVCPT-GASYQTKDGLVLVDPKKCIACGACIAACPYDA-RYLHPAGYVSKCTFCAHRLEKGKVPACVETCPTYCRTFGDLEDPESPVAKALKAAERVDVLR------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VPW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -57817 for 1115 contacts (-51.9/contact) +
2D Compatibility (PS) -16075 + (NN) -5749 + (LL) 6696
1D Compatibility (HY) -10400 + (ID) 3250
Total energy: -86595.0 ( -77.66 by residue)
QMean score : 0.260
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