Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRTLHVDLGERSYPIYIGENLLGDARWFAPHIVGRRVAVISNETVAPLYLETLLKALQGHEVTP--VVLPDGEAYKQWETLQLIFDVLLKERHDRKTTLIALGGGVIGDMAGFAAACYQRGVNFIQVPTTLLSQVDSSVGGKTGINHPLGKNMIGAFYQPQAVVIDTASLKTLPSRELSAGLAEVIKYGFICDEPFITWLEAHMDALLALEPTVVTEAIERSCAAKARVVGADERESGVRATLNLGHTFGHAIETQQGYGVWLHGEAVGAGTVMALEMSHRLGWLSAAERDRGIRLLRRAGLPVVPPAEMTAEDFMEHMAVDKKVLDGRLRLVLLQGLGNAVVTGDFPREILDATLRTDYRALADQLGDE |
3QBD Chain:B ((45-346)) | -----------------------------------KVAVVHQPGLAETA-EEIRKRLAGKGVDAHRIEIPDAEAGKDLPVVGFIWEVLGRIGIGRKDALVSLGGGAATDVAGFAAATWLRGVSIVHLPTTLLGMVDAAVGGKTGINTDAGKNLVGAFHQPLAVLVDLATLQTLPRDEMICGMAEVVKAGFIADPVILDLIEADPQAALDPAGDVLPELIRRAITVKAEVVAA-----ELREILNYGHTLGHAIERRERY-RWRHGAAVSVGLVFAAELARLAGRLDDATAQRHRTILSSLGLPVSYDPDALPQ-LLEIMA--------VLRFVVLDGLAK------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3QBD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -198447 for 2407 contacts (-82.4/contact) +
2D Compatibility (PS) -30530 + (NN) -12412 + (LL) 4696
1D Compatibility (HY) -22800 + (ID) 6350
Total energy: -265843.0 ( -110.45 by residue)
QMean score : 0.472
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