Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLIIPAIDLKDGACVRLRQGLMEDATVFSDDPVAMAAKWVDGGCRRLHLVDLNGAFEGKPVNGEVVTAIARRYPDLPIQIGGGIRSLETIEHYVRAGVSYVIIGTKAVKQPEFVGEACRAFPGKVIVGLDAK--DG--FVATDGWAEVSEVQVIDLARRFEADGVSAIVYTDISKDGMMQGCNVEATAALANATRIPVIASGGIHNLGDIQKLLDARTPGIIGAITGRAIYEGTLDVAEAQALCDNFKA
2Y85 Chain:D ((3-240))
LILLPAVDVVEGRAVRL---------EYGS-AVDAALGWQRDGAEWIHLVDLDAAF-GRGSNHELLAEVVGKL-DVQVELSGGIRDDESLAAALATGCARVNVGTAALENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGW-ETDGGDLWDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYARRFTLPQALA-------
General information:
TITO was launched using:
RESULT:
Template:
2Y85.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -200091 for 1971 contacts (-101.5/contact) +
2D Compatibility (PS) -24784 + (NN) -12318 + (LL) 1104
1D Compatibility (HY) -16800 + (ID) 3850
Total energy: -256739.0 ( -130.26 by residue)
QMean score : 0.714
(partial model without unconserved sides chains):
PDB file :
Tito_2Y85.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y85-query.scw
PDB file :
Tito_Scwrl_2Y85.pdb
: