Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MATPA-YMSITGTKQGLITAGAFTEDSVGNTYQEGHEDQVMVQGFNHE-VIIPRDP-Q-SGQPTGQRVHKPVVITKVFDKASPLLLA-ALTSGERLTKVEIQWYRTSAAGTQEHYYTTVLEDAIIVDIKDYMHNCQDPGNAHFTHLEDVHFTYRKITWTHEVSGTSGSDDWRSPVAG--------- |
| 1Y12 Chain:A ((2-162)) | --AVDMFIKIGDVK--------------GESKDKTHAEEIDVLAWSWGMS--QSGSMHMGGGGAGKVNVQDLSFTKYIDKSTPNLM-MACSSGKHYPQAKLTIRKAGGENQVE-YLIITLKEVLVSSVS------TGGSGGEDRLTENVTLNFAQVQVDYQPQKADGAKDGGPVKYGWNIRQNVQA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1Y12.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 24692 for 962 contacts (25.7/contact) +
2D Compatibility (PS) -14544 + (NN) 2615 + (LL) 2064
1D Compatibility (HY) 9600 + (ID) 400
Total energy: 24027.0 ( 24.98 by residue)
QMean score : 0.032
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