Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDA-DGLAMAEPGAMAEQLNARILTHTRVTGIDPGHQRIWIG------EEEVRYRDLVLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQAAA--GKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAG-------------------EGLEAHLSDGEVIPCDLVVSAVGLRPRTELAFAAGLAVN--RGIVVDRSLRTSHANIYALGDCAEVDGL------NLLYVMPLMACARALAQTLAGNPSQV-AYGPMPVTVKTPACPLVVSPPPRGMDGQW----L------------VEGSGTDLKVLCRD-TAGRVIGYALTGAAVN-EKLALNKELPGLMA |
| 3NTD Chain:A ((1-427)) | ---MKKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTP-VDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMFGREERYQGTQGTAICKVFDL-AVGATGKNEKQLKQAGIAFEKVYVHTASHASYYPGAEVVSFKLLFDPVKGTIFGAQAVGKDGIDKRIDVMA------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NTD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -259037 for 3181 contacts (-81.4/contact) +
2D Compatibility (PS) -40447 + (NN) -15099 + (LL) 1012
1D Compatibility (HY) -15200 + (ID) 4300
Total energy: -333071.0 ( -104.71 by residue)
QMean score : 0.420
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