Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADNFSLHDALSGSGNPNPQGWPGAWGNQPAGAGGYPGASYPGAYPGQAPPGAYPGQAPPGAYPGAPGAYPGAPAPGVYPGPPSGPGAYPSSGQPSATGAYPATGPYGAPAGPLIVPYNLPLPGGVVPRMLITILGTVKPNANRIALDFQRGNDVAFHFNPRFNENNRRVIVCNTKLDNNWGREERQSVFPFESGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRVKKLNEISKLGISGDIDLTSASYTMI
3AYC Chain:A ((1-135))
-------------------------------------------------------------------------------------------------------------------MPYNLPLPGGVVPRMLITILGTVKPNANRIALDFQRGNDVAFHFNPRFNENNRRVIVCNTKLDNNWGREERQSVFPFESGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRVKKLNEISKLGISGDIDLTSASYTMI
General information:
TITO was launched using:
RESULT:
Template:
3AYC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94437 for 1018 contacts (-92.8/contact) +
2D Compatibility (PS) -14465 + (NN) -1653 + (LL) -2680
1D Compatibility (HY) -19600 + (ID) 6700
Total energy: -139535.0 ( -137.07 by residue)
QMean score : 0.311
(partial model without unconserved sides chains):
PDB file :
Tito_3AYC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AYC-query.scw
PDB file :
Tito_Scwrl_3AYC.pdb
: