Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKEIAKSLLDIEAVTLSPNDLYTWSSGIKSPIYCDNRVTLGYPLVRGAIRDGLINLIKEH--FPEVEVISGTATAGIPHAAFIAEKLKLPMNYVRSSNKSHGKQNQIEGAKSEGKKVVVIEDLISTGGSSVTAVEALKQAGAEVLGVVAIFTYGL-KKADDTFSNIQLPFYTLSDYNELIEVAENEGKISSEDIQTLVEWRDNLA
4OHC Chain:E ((22-211))
-----AKILLEVQAVHFNAEKPFIFTSGWASPVYIDCRKLISYPRVRRALMEMAETTITRDIGFEQIDAVAGGETAGIPFAAWIADRMMVPMQYVRKKPKGFGRNAQIEGHLEEGSRVLLVEDLTTDSRSKINFVNALRTAGATVNHCFVLFHYNIFKESVSVLKDIDVDLHALATWWDVLRVAKASGYFETKTL-----------
General information:
TITO was launched using:
RESULT:
Template:
4OHC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113582 for 1450 contacts (-78.3/contact) +
2D Compatibility (PS) -20121 + (NN) -5624 + (LL) 1788
1D Compatibility (HY) -17600 + (ID) 3150
Total energy: -158289.0 ( -109.16 by residue)
QMean score : 0.619
(partial model without unconserved sides chains):
PDB file :
Tito_4OHC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4OHC-query.scw
PDB file :
Tito_Scwrl_4OHC.pdb
: