Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYKNILLGVDTQLKNEKALKEVSKLAGE-GTVVTVLNAISEQDAQASIKAG----VHLNKLTEERSKRLEKTRKALEDYGIDY-DQIIVRGNAKEELLKHANSGKYEIVVLSNRKAEDKKKFVLGSVSHKVAKRATIPVLIVK
3TNJ Chain:A ((5-146))
VYHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLD--------YGTAIPLDTETTYDAMLDVEKQKLSQIGNTLGIDPAHRWLVWGEPREEIIRIAEQENVDLIVVGSH---------LGSTANSVLHYAKCDVLAVR
General information:
TITO was launched using:
RESULT:
Template:
3TNJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60653 for 857 contacts (-70.8/contact) +
2D Compatibility (PS) -13557 + (NN) -7497 + (LL) 1484
1D Compatibility (HY) -9200 + (ID) 1400
Total energy: -90823.0 ( -105.98 by residue)
QMean score : 0.727
(partial model without unconserved sides chains):
PDB file :
Tito_3TNJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TNJ-query.scw
PDB file :
Tito_Scwrl_3TNJ.pdb
: