Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTFEPYPFERLRALFKEITPKKKGLDLGIGEPRFETPKFIQDALKSHTH-SLNIYPKSAFEESLREAQRGFFKRRFKIELKE-NELVSTLGSREVLFNFPSFVLFDYPNPTIAYPNPFYQIYEGSAQFARAKSLLMPLVKEND--FT-PSLNEKELQEVDLVILNSPNNPTGRTLSLEELIAWVKLALKHDFILINDECYSEIYENTP-PSSLLEACMLADNGAFKNVLVIHSLSKRSSAPGLRSGFIAGDSSLLEKYKAFRTYLGYTSANAIQKASEVAWLDD---RHAEFFRNIYANNLKLARKIFKE----TLIYPYSFYAYLPVKD----GENFAKTLYQNEGITTLPALYLGRNHIGADYVRLALVYDTSLLEKPLEIIEAYRENYA |
1GD9 Chain:A ((22-387)) | -----------------AAGMKDVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEE--VLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASL-----DGMFERTITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKA--GEGYVRISYATAYEKLEEAMDRMERVLKERK |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GD9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -138200 for 3129 contacts (-44.2/contact) +
2D Compatibility (PS) -37770 + (NN) -21027 + (LL) 2208
1D Compatibility (HY) -14400 + (ID) 4600
Total energy: -213789.0 ( -68.33 by residue)
QMean score : 0.417
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