Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKILLTNDDGYHAKGIKALEQALENMAEIYVVAPKHEKSACSQCITITAPLRAEKIKGKEGRHYRIDDGTPSDCVYLAINELFKHVCFDLVISGINLGSNMGEDTIYSGTVAGAIEGTIQGVPSIAISQILSNKNKNTPLSFDLAQKIIQDLVQNVFTKGYPLKGRKLLNVNVPNCSLQEYKGERITPKGYRLYKKEVHKRTDPKNESYFWLGLHPLKWQKRENEDRLSDFDAIASNHASITPLNLDLTSYDDLKSLESWHEGMLK |
2V4O Chain:C ((16-257)) | --RILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGD---IAVQMGTPTDCVYLGVNALMRPRP-DIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSL-------NGYQHYDTAAAVTCALLRGLSRE--PLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPD----TDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGV |
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General information:
TITO was launched using:
| RESULT:
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Template: 2V4O.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -68416 for 2002 contacts (-34.2/contact) +
2D Compatibility (PS) -25476 + (NN) -653 + (LL) 920
1D Compatibility (HY) -18400 + (ID) 4700
Total energy: -116725.0 ( -58.30 by residue)
QMean score : 0.407
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