Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDTNNNIEKEILALVKQNPKVSLIEYENYLSQLKYNPNASKSDIAFFYAPNKFLCTTITAKYGALLKEILSQNKVGMHLAHSVDVRIEVAPKIQVNAQSNINYKATKTSVKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALEKHKKVVLVTSEDFLTDFLKHLDNKNMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHTFNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLNKITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNATIDLNLAKTVLEDLQ-KDHAEGSSLENILLAVAQSLNLKSSEIKVSSRQKNVALARKLVVYFARLYTPNPTLSLAQFLDLKDHSSISKMYSSVKKMLEEEKSPFILSLREEIKNRLNELNDKKTAFNSSE |
| 3R8F Chain:D ((8-302)) | -----------------------------------------------------------------------------------------------------------------YTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEI-ELDNKTRFKIIKEKLKEFNLELRKEVIDYLLEN-TKNVREIEGKIKLIKLKG---------------FEGLERKERKERDKLMQIVEFVANYYAVKVEDILSDK-NKRTSEARKIAMYLCRKVCSASLIEIARAFKRKDHTTVIHAIRSV----EEEKRKFKHLVGFLEKQAFDKIC---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3R8F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -139448 for 2232 contacts (-62.5/contact) +
2D Compatibility (PS) -32138 + (NN) -18564 + (LL) 11224
1D Compatibility (HY) -22400 + (ID) 5450
Total energy: -206776.0 ( -92.64 by residue)
QMean score : 0.534
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