Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VNNPKPCEWKSNELSRGYIADYKAFNFVDGEGVRCSLYVSGCPFHCEGCYNKAAQSFKY-GKPYTKELEDDILKDIG----HESVQGLTLLGGEPFL-NTATCLSIVKRIRATYG---ETKDIWSWTGYTWDEMMQETADKLE-LLSLIDVLVDGRFEQKLFDPNLAFRGSSNQRIIDVQKSLAAGEVVLYEL
1OLT Chain:A ((52-204))
-------------------------------PLSLYVHIPFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLNKAQISRLMKLLRENFQFNADAEISIEVDPREIELDVLD--HLRAEGFNRLSMGVQDFNKEVQ-RLVNR--EQDEEFIFALLNHAREIGFT----
General information:
TITO was launched using:
RESULT:
Template:
1OLT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39423 for 990 contacts (-39.8/contact) +
2D Compatibility (PS) -15379 + (NN) -3766 + (LL) 2272
1D Compatibility (HY) -2000 + (ID) 700
Total energy: -58996.0 ( -59.59 by residue)
QMean score : 0.406
(partial model without unconserved sides chains):
PDB file :
Tito_1OLT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OLT-query.scw
PDB file :
Tito_Scwrl_1OLT.pdb
: