Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDALFNYKEFVRLSHEGNIKYEKLKVPKHTDLVDTASQRNNHVYLIVEGFVSISMNPQSNS---IYTVLGKGSFVNYYSLFQGNVDDFLFTAI-SPCT-IYKYSFKDLEYFLSMFPENFGFQFFIMRDLARHAFFKSLFA-ETSSSDKLEL-SFSNMGKL-HGTLYEKDSVILPKEMRTSTIAAYSNLSKSSFYKQLTLLKEHGKIWKKGKEWVVKDKGLYNYVKVRQFDD
4RFA Chain:A ((10-225))
-EKLDTVLGYLKEFPDYYKYVTKKTYTLNEKIIFEDEKAK-SIFFIVEGYAAVELEDNLRKTNYISIFVLPYNVLGIDAFSS---YPKHSITVMSESLMLYKIDADFLLNILSIKPDVNDFLLTSIADVFARHYALL--GMIAKTPKERIYMALENLAVEMGTEDEERNEIVLPNFINQSVLARYCRTTQPNISNLLTELVEEEFLINKKSPYRIDKDSLD----------
General information:
TITO was launched using:
RESULT:
Template:
4RFA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67465 for 1406 contacts (-48.0/contact) +
2D Compatibility (PS) -22182 + (NN) -7874 + (LL) 1036
1D Compatibility (HY) -10000 + (ID) 1450
Total energy: -107935.0 ( -76.77 by residue)
QMean score : 0.350
(partial model without unconserved sides chains):
PDB file :
Tito_4RFA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RFA-query.scw
PDB file :
Tito_Scwrl_4RFA.pdb
: