Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPNHIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDSLDEFF--EKNEGGEFYYITKFGRHVYSDIDYSDTNKDYFFVFGKETTGLPDALLQE-NEENCLRIPMTDHIRSLNLSNTAAILAYEALRQQNFGALLQEPNYDRKIFQD
4KGN Chain:E ((7-156))
---NVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRDWDAFVAAEAPDPARMFAFTTRGSGRFHDRAFEPGD---WFVFGAETRGLAPALVDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQAGF----------------
General information:
TITO was launched using:
RESULT:
Template:
4KGN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78857 for 1065 contacts (-74.0/contact) +
2D Compatibility (PS) -15914 + (NN) -6750 + (LL) 956
1D Compatibility (HY) -12400 + (ID) 3200
Total energy: -116165.0 ( -109.08 by residue)
QMean score : 0.479
(partial model without unconserved sides chains):
PDB file :
Tito_4KGN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KGN-query.scw
PDB file :
Tito_Scwrl_4KGN.pdb
: