Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VATKHEQILKYIENLAVGEKISVRKIAKNLSVSEGTAYRAIKDAEIIGFVSTIKRVGTLRIERKQKDSIEKLTFAEIVNMIDGQVLGGRAGLYKSLNKFVIGAMTVEAMERYTDAGNLLIVGNRVSAHELALKRGAAVLITGGFDTDDEVKQLADEKELPILSTSYDTFTVATMINRAIYDQLIKKEVVFVEDILTPLETTAFLSTSDKVEDWHKMEEATGHSRFPVVNRAMRLTGMVTSKDILE-----------------KNPSISIERVMTKNPLTVGPKMSVASVAHMMIWESIEVIPVVKDDLTLIGIVSRQDILKSMQMIQKQPQVGETIDDTIANQLSEKTDTGEEADYEFKVSPQMTNSLGTLSYGVFTQVVCEVVQQKLFSMKKRNVAIENVTMYFLKPVQMDATIIIKPRILEMGRKAGKLDVELYLEGILTGKAIVACQMMER |
3LFZ Chain:A ((123-277)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------DENQLISLITERDVI-------RALLDKIDENEVI--DDYIT--RDVIVATPGERLKDVARTMVRNGFRRLPVVSEG-RLVGIITSTDFIKLLGSDWAFNHMQTGNVREITNVRMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLK------------------------------------------------------------------------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3LFZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -80535 for 970 contacts (-83.0/contact) +
2D Compatibility (PS) -14432 + (NN) -2342 + (LL) 25040
1D Compatibility (HY) -12400 + (ID) 2000
Total energy: -86669.0 ( -89.35 by residue)
QMean score : 0.557
|
|
|