Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKHITTVVIWKILRCLSLVFGVSILTFILLKQSPVDPVMASVNYDTSLTPVQYKAIAHHYGLDKPAPVQYFIWLKNFIQGHLGTSLVYRQPVIDIIRSRAGASFILMGLSWVLSGLIGFILGTLSAFHQGKLLDRIVRWFSYLQISVPTFWIGLIFLLIFSVQLGWFPIGISSPIGTLSQDITLADRIKHL-ILPVFTLSILGIANVTLHTRTKMMSVLSSEYVLFARARGETEWQIFKNHCLRNAIVPAITLHFSYFGELFGGSVLAEQVFSYPGLGSTLTEAGLKSDTPLLLAIVMIGTLFVFAGNLIADILNSIINPQLRRKV |
4FYP Chain:A ((34-261)) | GLSINY------PNCRSWHLGVETSNIINFDTVP-------------------------------------ANCKAYVEDYLITS---KQYQYDSKTVNKEAYFYAKGLALKNDTVNVWIFDL-----DDTLLSSIPYYAKYGYGTENTAP---------GAYWSWLESGESTP--GLPETLHLYENLLELGIEPIIISDRWKKLSEVTVENLKAVGVTKWKHLILKPNGSKLTQVVYKSK-VRNSLVKK--------GYNIVGNIGDQ-------------WADLVEDTP--------GRVFKLP-----NPLYYVPSLEHHHH- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4FYP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -117279 for 1800 contacts (-65.2/contact) +
2D Compatibility (PS) -23110 + (NN) 3602 + (LL) 8724
1D Compatibility (HY) -5200 + (ID) 2400
Total energy: -135663.0 ( -75.37 by residue)
QMean score : 0.053
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