Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRHFETTRRIVIKVGTSSLVQTSGKINLSKIDHLAFVISSLMNRGMEVILVSSGAMGFGLDILKMDKRPQEISQQQAVSSVGQVAMMSLYSQIFSHYQTHVSQILLTRDVVVFPESLQNVTNSFESLLSMGILPIVNENDAVSVDEMDHKTKFGDNDRLSAVVAKITKADLLIMLSDIDGLFDKNPNIYDDAVLRSHVSEITDDIIKSAGGAGSKFGTGGMLSKIKSAQMVFDNNGQMILMNGANPRDILKVLDGHNIGTYFAQGK
2J5T Chain:B ((7-255))
----------LVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLRALLDNNVVPVINENDAVATAEI----KVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAI------------MSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQA
General information:
TITO was launched using:
RESULT:
Template:
2J5T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -186563 for 1946 contacts (-95.9/contact) +
2D Compatibility (PS) -25255 + (NN) -11164 + (LL) 516
1D Compatibility (HY) -16000 + (ID) 4100
Total energy: -242566.0 ( -124.65 by residue)
QMean score : 0.452
(partial model without unconserved sides chains):
PDB file :
Tito_2J5T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J5T-query.scw
PDB file :
Tito_Scwrl_2J5T.pdb
: