Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTYIEILGQNAKKASQ--SVARLSTASKNEILRDLARNIVADTETILTENARDVAKAKDNGISEIMVDRLRLNKDRIQAIANGIYQVADLADP-IGQVVSGYTNLDGLKILKKRVPLGVIAMIFE-SRPNV-SVDAFSLAFKTGNAIILRGGKDAIFSNTALVNCMRQTLQDTGHNPDIVQLVEDTSHVVAEELMQATDYVDVLIPRGGAKLIQTVKEK---SKIPVIETGVGNVHIYIDEFADLDMAAKIVINAKTQR-PSVCNAAEGLVVHQAIAKGFLSQLEKMLKESNQSVEFRADEE-----------------------------------------ALQLL--ENAVA---ASESDYATEFLDYIMSVKVVDSFEQAISWINKYSSHHSEAIITNNISRAEIFQDMVDAAAVYVNASTRFTDGFVFGLGAEIGISTQKLHARGPMGLEALTSTKYYINGTGQVRE |
| 3U4J Chain:A ((61-501)) | -DDVRKAVAAARKAFDAGPWPRMSGAERSRLMFKVADLILARQEELALIESLEVGKP----IAQAR-GE-------IGFCADLWSYAAGQARALEGQTHNN--IGDDRLGLVLREPVGVVGIITPWNFPFIIASERVPWAIGSGCTVVLKPSEFTSGTSIRLAELAREA----GIPDGVFNVVTGYG-DPAGQVLAEDPNVDMVAFTGSVRVGTKLGEIAARTVKRVGLELGGKGPQIVFADADLDAAADGIAYGVYHNAGQCCISGSRLLVQEGIRDALMERLLDISRK----VAF-GDPLNERTKIGAMISEAHAEKVHSYVTAGITSGAELLLGGERIGREAGLYYAPTVFAGVTPDMSIAREEIFGPVLSTLTFKTADEAVALANATEFGLSASVWSTNLETALQTIRRIRAGRCWINSVIDGTPELPIGGYKKSGLGR----ELGRYGFDEYSQFKGVHVTLGRPAP |
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General information:
TITO was launched using:
| RESULT:
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Template: 3U4J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -190740 for 3353 contacts (-56.9/contact) +
2D Compatibility (PS) -42214 + (NN) -13522 + (LL) 1544
1D Compatibility (HY) -10400 + (ID) 3700
Total energy: -259032.0 ( -77.25 by residue)
QMean score : 0.440
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