Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MFKKIILSIATIAATASLAVSVQASEKVELKVATDSDTAPFTYQKDGKFKGYDVDVVKAVFKGSKYKVTFKTVPFDTISTGIDAGKFDLSANDFSYNKERAEKYLFSDPISRSNYAVVGKKG-SHYKSLSDLSGKSTEVLSGVNYAQVLENWNKNHPNKKPIKIKYVSGTTGVTSRLKNIESGKIDFILYDAISSDYIVKDQS-LNLSVSPLKGKIGNNKDGLEY-LLLPKDKKGKTLQKFINKRIKVLKENGTLARLSKQYFGGDYVSNIDK |
| 1WDN Chain:A ((4-223)) | ----------------------------KLVVATDTAFVPFEFKQGDLYVGFDVDLWAAIAKELKLDYELKPMDFSGIIPALQTKNVDLALAGITITDERKKAIDFSDGYYKSGLLVMVKANNNDVKSVKDLDGKVVAVKSGTGSVDYAKANI---K---TKDLRQFP-N--IDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKA--VGDS---L-EAQQYGIAFPKGS--DELRDKVNGALKTLRENGTYNEIYKKWFGTEPK----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1WDN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -54535 for 1790 contacts (-30.5/contact) +
2D Compatibility (PS) -23973 + (NN) -12001 + (LL) 2980
1D Compatibility (HY) -14400 + (ID) 2750
Total energy: -104679.0 ( -58.48 by residue)
QMean score : 0.470
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