Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGRLIALGLVSLGALELYKNR---KTIKDSYQNTKIETDSAKLKLERIKNDLAIISQEKEKIRLISQELNHKFQVFNKDIQPRLEEINQRMAKYQEKDE
1SVF Chain:A ((4-50))
-------------VALVKANENAAAILNLKNAIQKTNAAVADVVQATQSLGTAVQAVQDHINSVVSPAITAANY---------------------------
General information:
TITO was launched using:
RESULT:
Template:
1SVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 7235 for 158 contacts (45.8/contact) +
2D Compatibility (PS) -4707 + (NN) -2127 + (LL) 3636
1D Compatibility (HY) -400 + (ID) 200
Total energy: 3437.0 ( 21.75 by residue)
QMean score : 0.475
(partial model without unconserved sides chains):
PDB file :
Tito_1SVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SVF-query.scw
PDB file :
Tito_Scwrl_1SVF.pdb
: