Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MGSKATFHIGTI-IKTHYLFNFFRKQGIVAMTQEEIDQMIEDWISN----GFPDELKRLIPDEE--
2KSW Chain:A ((1-66))
VPVGSDCEPKLCTMDLVPHCFLN--PEKGIVVVHGGCALSKYKCQNPNHEKLGYTHECEEAIKNAPRP
General information:
TITO was launched using:
RESULT:
Template:
2KSW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7495 for 332 contacts (-22.6/contact) +
2D Compatibility (PS) -6171 + (NN) -2048 + (LL) 264
1D Compatibility (HY) -3200 + (ID) 600
Total energy: -19250.0 ( -57.98 by residue)
QMean score : 0.412
(partial model without unconserved sides chains):
PDB file :
Tito_2KSW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KSW-query.scw
PDB file :
Tito_Scwrl_2KSW.pdb
: