Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKVTMTISGEMILIEYYGENFPLHPQEWKDYHSFWQEDYIRFHFQTDIGTLTIYDGNYDLTLLWGEPVHRIEKLYHQLLTDPIPVMVYGDERFQEAYRTENGQTKNLYLEHVCNVCKEAYEVLFKQINQKERNT
3CYP Chain:B ((119-251))
GIDPFTFENATSDAINQDMMLYIERIAKIIQKLP---KRVHINVRGFTD--DTPLFKSHYELAANRAYRVMKVLIQ-YGVNPNQLSFSSYGSTNPIAPNDSLENRMKNNRVE-IFFSTDANDLSKIHSILDNEFNP
General information:
TITO was launched using:
RESULT:
Template:
3CYP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34740 for 959 contacts (-36.2/contact) +
2D Compatibility (PS) -13432 + (NN) 2090 + (LL) 428
1D Compatibility (HY) 800 + (ID) 750
Total energy: -45604.0 ( -47.55 by residue)
QMean score : 0.195
(partial model without unconserved sides chains):
PDB file :
Tito_3CYP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CYP-query.scw
PDB file :
Tito_Scwrl_3CYP.pdb
: