Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTIFDERELKERFTHENRVSFYEFVAKYDAQMVPVMKAKGYRCIHSME-------RTVVFTFGEFTIRRRRWQKGEHWVVPVDEKLGLKKNVRYSLEFMYQIASLATMMPYEKVIKVVQMMYCIVIT-KPTVVKAVKISRELLKEKEAYRFFDEDIPVDKEPVDMIYLEGDG---VMVKAREEGLDNRNVDLSHFVVHTGSQKVGSNRFVLQNKKEFVSLDNRQT---RQKILDYLYNHFYIAP--NTLLITNSDGGHGYTPYVFKEIAKALKVKQHEHFWDRYHVNEKIKSFFKLYPVELMTGAFQSIKQHDKEKLRTVLDTTEALILMEEEMEGFNQFKRKLLNNFQYTKSAELRGFSRAGIGVMESQHRKITYRMKKRGMYWTIQGAETMSQLIVLSYEGQLRDLF-----FGSWREDYQKYQELENLSAGKIKHEQNKINKRYDLQTLGRLRYGRHRNL----- |
| 3GRH Chain:A ((-4-392)) | --MQRPSDQTAPGTSSRPILSAKEAQNFDAQHYFASLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHT----------TIQAAVDAAIIKRTNKRQYIAVMP----GEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPADWRHDVNPRGK------YMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRL---------------ETNRQPRTLVTNSYIEG-----DVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLS--NIYYGFLAVNSRFNAFGD----GVAQLGRSLDVDAN------------------TNGQVVIR--DSAINEGFNTAKPWADAVISNRPFA-------GNTGSVDDNDEIQRNLNDTNYNRMWEYNNRGVGSK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GRH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 136074 for 3115 contacts (43.7/contact) +
2D Compatibility (PS) -35923 + (NN) 21243 + (LL) 6908
1D Compatibility (HY) 24800 + (ID) 1000
Total energy: 152102.0 ( 48.83 by residue)
QMean score : -0.070
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