Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKKLLRKEVLITLKSQPQAYKSEVDCKLLEAFIKTKAYQNSCVIATYLSFDYEYNTQLLIKQALCDGKRVLVPKT-YPKGKMIFVDYQKDNLRATPFGLLEPVNDRAVEKASIDLIHVPGLIFNNKGFRIGYGAGYFDRYLSDFEGDTISTIYRCQRQDFVE-EKHDVAVKEVLCL
1WKC Chain:A ((1-166))
MTKAELRRRARAAWRRLDLKAL---SRAVGAALLPWLRERGFRHILLYHPLPHELNLLPLMEAYP---ARYYLPKVAGK--GLTVHP--FGPLA-------EPTTPP-EDPRVLDLVVVPGLAFDREGYRLGHGQGFYDRFLKEVRAATVGVVPQALLFPALPRDPWDVPVDHLATE
General information:
TITO was launched using:
RESULT:
Template:
1WKC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49650 for 1195 contacts (-41.5/contact) +
2D Compatibility (PS) -16778 + (NN) -4484 + (LL) 692
1D Compatibility (HY) -4000 + (ID) 1750
Total energy: -75970.0 ( -63.57 by residue)
QMean score : 0.425
(partial model without unconserved sides chains):
PDB file :
Tito_1WKC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WKC-query.scw
PDB file :
Tito_Scwrl_1WKC.pdb
: