Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKKTDTPDYKPSIYSLTRDELIAWAIEHGEKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLNENFVVNPLKQRIVQESADGTVKYLFELPDGMLIETVLMRQYYGLSVCVTTQVGCNIGCTFCASGLIK--------KQRDLNNGEITAQIMLVQKYFDERGQGERVSHIVVMGIGEPFDNYTNVLKFLRTVNDDNGLAIGARHITVSTSGLAH--KIREFANEGVQVNLAVSLHAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTNRRVTFEYIMLNGVNDTPENAQELADLTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKNGVNCVVRQEHGTDIDAACGQLRSNTMKRDRQKAKVGR |
| 1TV8 Chain:A ((13-200)) | ------------------------------------------------------------------------------------------------------------IRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAE--------LGVKKIRITG-GEPLMR-RDLDVLIAKLNQIDGI----EDIGLTTNGLLLKKHGQKLYDAG-LRRINVSLDAIDDTLFQSINNR--NIKATTILEQIDYATS-IGLNVKVNVVIQKGI--NDDQIIPMLEYFKD--KHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSF |
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General information:
TITO was launched using:
| RESULT:
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Template: 1TV8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -89083 for 1334 contacts (-66.8/contact) +
2D Compatibility (PS) -20196 + (NN) -16965 + (LL) 9660
1D Compatibility (HY) -11600 + (ID) 1750
Total energy: -129934.0 ( -97.40 by residue)
QMean score : 0.386
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