Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKDEMIAK--GAKYIQSIYQDPFIQGIIKGRLDHDVICHYLQADNIYLGKFADIYALCLAKSDNLRDKQFFLEQIDFTLNRELADGEGPHQALAA-YTNRSYQD-IIEKGVWYPSADHYIKHMYFHFYENGIAGALAAMSPCPWIYHQLAKKIIEENQFLNGNPFNNWITFYANDTVEELMENYFRMMDYYAQNLSKEKQADLVDAFVKSCQMRDVFFKWQ
3RM5 Chain:A ((332-545))
-FYEYLINHPKVKPHWDSYINHEFVKKVADGTLERKKFQFFIEQDYAYLVDYARVHCIAGSKAPCLEDMEKELVIV-GGVRTEMG----QHEKRLKEVFGVKDPDYFQKIK-RGPALRAYSRYFNDVSRRGNWQELVASLTPCLMGYGEALTKMKGKVTAPEGSVYHEWCETYASSWYREAMDEGEKLLNHILETYPPEQLDTLVTIYAEVCELETNFWTAA
General information:
TITO was launched using:
RESULT:
Template:
3RM5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135690 for 1604 contacts (-84.6/contact) +
2D Compatibility (PS) -22246 + (NN) -5401 + (LL) 8
1D Compatibility (HY) -6800 + (ID) 1700
Total energy: -171829.0 ( -107.13 by residue)
QMean score : 0.491
(partial model without unconserved sides chains):
PDB file :
Tito_3RM5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RM5-query.scw
PDB file :
Tito_Scwrl_3RM5.pdb
: